Nationwide HIV-1 seroprevalence rates in Vietnam are estimated to be almost 10% for IV drug users (IVDUs), 3% for female prostitutes, and 2% for males attending clinics for sexually transmitted diseases. These estimated prevalences are comparable to those observed in the same risk groups in Thailand 5 years ago. Blood samples were analyzed from two female HIV-1-seropositive prostitutes and three male IVDUs in southern Vietnam during April and May 1995. HIV-1 infection was confirmed by nested PCR in all five samples. Sequence alignment and comparison of the 325-nucleotide region with the major HIV-1 subtypes from widely separated geographic regions indicate that the Vietnam HIV-1 strains are genetically most similar to virus strains from Thailand, diverging from well-characterized subtype E strains by 3.1-5.9% and 5.6-12.0% at the nucleotide and deduced amino acid levels, respectively. The interstrain genetic variation among the Vietnam env sequences was 2.5-4.9%. None of the prostitutes and IVDUs studied had traveled to or worked in Thailand or Cambodia, and neither of the prostitutes used IV drugs, suggesting that they were infected sexually with indigenous strains circulating within Vietnam. The phylogenetic clustering of the Vietnam HIV-1 strains and their relative low degree of sequence variability are consistent with a founder effect and the recent introduction of HIV-1 subtype E.
